Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015913227.1_cds_XP_016463276.1_56412
CDS Infomation

[gene=LOC107786331] [db_xref=GeneID:107786331] [protein=zinc finger CCCH domain-containing protein 41-like] [protein_id=XP_016463276.1] [location=complement(join(208219..208761,209284..209634,210086..211285,211652..212383))] [gbkey=CDS]
Sequence

ATGGAGCTTAAAGTTTCATCTTCAAAGCCAACACTTTTACCTTCTGATTGCAACAGTGAT
CCTGAAGAGAAAGAAATCAGTGAAGAGGATGATGATGATCGCAATCATAAGCATCGTAGG
AGAGAACTACATTCTCAATCTGATGAGACTGATGCCGTTGAACCAGTTTTCAGTAGACCA
TTCAGAAAACGAAAGCCTTTTGAGAATGGACATCCTTATGGTGGAGGAGATTCTCAGTTT
AGTGAAACCAGGTTCCCAAGAAGACGAGGAATGGGTTCATTTTCCAGGGCCCCTTTGGAC
TCATACCAAAGAATGAGGCTGAACCAATCACTGTCTGGTGAAGCTAGTAATGGTAGGGGT
CGAGGGAGAGAACATAGTGCTTGGGCCCAACGTGATTCAAGGTTTGGCTCGGCTGATATT
GCATCTCACCTGTTTCCACAGGGCCCTGTTACTCCTGGTCTCTTTACTGGAAGAGGGGTG
CAAAACGTTTCTAATGCACAGAGTTCATCTTGGAGTGCATTTGGAATGGTTCTAGGAATG
TCTAATGGCGGCCTTGATACAATTCATTCCCTCGGTTTCCAGGGAACACTCAGGCCACCC
TTGAATCCTACTGTGGGTATGGGTCTTCCAAGGCAGCGATGTAGAGACTTTGAGGAGCGT
GGATTTTGCCTAAGAGGAGATATGTGCCCGATGGAGCATGGAGTAAATCGTATTGTTGTT
GAAGATGTTCAGAGCCTTTCTCAGTTTAATCTTCCAGTGTCACTTCCTAATGCACACATG
CTAGGACCAGCTACTGCACAAGGATCTTTACCTGTGATAGGCCCTTATGGATCATTGGTT
AGTGGCAAAGCTTTACATAACAAAAGTACCAAACCTCCTGTGATTGATGATGGATTGGGT
TTGACTGATGCTTTTGTTGATGGTTCTATGGCCGGGGGAGCTGATTTTTATGATCCTGAT
CAGCCTTTATGGTCAAATGATCGTTCTGAAACTTCAGCAGTACTCCAGGATTTAAATCCA
TCTAAAATTGATGATACTGGGCCTTTGTTAGATGCAGACTCCTCTGATCATGATCAAGTT
GGGCAGTGTGATGCCTTTGAACTTGAGCATCCACTTAAAGGTGCTACGGCAGCTTCAGGA
TCTCAGAGTGTGTGGGAAAGAATCAGAAGGTCAAAAAATAAGTCGAATGTGAAAGAGATC
ACTGATTTTACAGGCGATGCTTCAAGTTATGATGAAACGGGAAAAGATTTGGAATTATCC
TGCAGCAATCAAGGAAACTCCCATCCAGGGAAGCAAAAAATGACAGAATCATCTTTCAAG
CCCCAAAGTAGTTCTGGACATAATATGAGAAAACCTTCTCAAAAGGCACTTCGTACTCTG
TTTGTGAGAGGCATTCCACAGAAAGACAACAAACCAGATGCTCTTCTTTCACATTTTCAA
AAATTTGGGGAGGTCATTGACATCCACATCCCACAGAGTGGTGAACGAGCTTTTATTCAA
TTTTCTAAGAGAGAAGAAGCTGAGGCTGCTTTAAGGGCACCTGATGCTGTGATGGGCAAC
CGTTTTATAAAGCTTTTCTGGGCAAACAGGGATAGAATTATGGATCATGGTTTAAATGGT
GGCATTAATTTACCTTTGACTCCTCGTGGAGTAACATCCAGTGTGGTTCAACCCCACCTA
TCTGTTCCTTATAAAGGAAAAGACAATATCCAGTCCTTGGCCTCAAAAGCTGCTGAACAG
GTTCCTGCTGTTCTGTTACCTTCTTCTGGTCTACCTAAGCCTGTGGCTCATAATGTTCCC
AAAGCTGCACCAGTGGTGCAAAAAAAGGTGGAGAGTTTAGAACTTTTGAAGGAAGAATTG
CGCAAGAAGCAGGAGCTGCTTGATCAGAAGCGGAATGAGTTCCGACGTCAGTTGGTTAAA
CTGGAGAAGCAGGCTGTAGGTGTGAAAGCTGAAGCAGTCTCAGACCAGGATCTGAAGAAA
CAGGAGGGAGAACCAGTATCTTATTCTGCAAAAGTGGAAAGTTCAAGCTCAGCGGAACTT
AATAATGATGTATCTTCAACACAAGCTGACGCAATCTCTGATTGTAGCAGATCAACAGAG
AATGCGGAGCGCTCTTGTTCTATATCATCTTCTACTGTGGCCACACAGGAACCTTCCAGC
TTGAAGCAGTCAATTCGTCCACTGGCACCACATGGTGCACCTTTTGTATTCAATAGATAC
AAAATAGACAATCGTCCCACTGCCTTCAAAGTCCTTCCACCTTTGCCATGTGGTCTTGCA
AATGTTGCTGTCTTGAAGGAACATTTCTCTGCTTTTGGTGACGTTACCTCTGTTGAGCTG
GAAGATTTGGAGCCTCAAGATAGTAGTAATGGCTCAGAGACGTTAAGCATATCTGCTAGG
ATATGTTTTCCAACGCGCCGGTCTGCTGAGAGGGCATTTTTGAATGGCAAAATCTGGCAA
GGCCAAGCTTTGCAGTTTATGTGGTTGCAGTCTAGTAATTCTACCAAGGATAGTGGTGTC
AGAAATGATGCTGCTCCTGCTTTGAAGCAGCCTTCAGATGCTAGTGCTCAACCCATCTCA
AAAGATTCGACTGGTTCAGAGGAAGGAAACACTGCAGGGACTGATGCACCTGAAAAAGGT
TACATGGAGCGCGAGAAGCAGCCTGCAGATGCTAATGTTCAGCCCATCCCAGAAGATCCT
TTGACTGGTTTACAGGAAGGAAATGCTGCAGGGATTGATGAACCTGAAAAAGGTTATATA
GAACATGTGACTGTGAATGAAGTTCCCAACTCCAGTTCAGCCTCTACTTCTGTTGATCGG
TCATGA

Peptide Sequence

PEP ID

XP_016463276.1
PEP Infomation

PREDICTED: zinc finger CCCH domain-containing protein 41-like [Nicotiana tabacum]
Sequence

MELKVSSSKPTLLPSDCNSDPEEKEISEEDDDDRNHKHRRRELHSQSDETDAVEPVFSRP
FRKRKPFENGHPYGGGDSQFSETRFPRRRGMGSFSRAPLDSYQRMRLNQSLSGEASNGRG
RGREHSAWAQRDSRFGSADIASHLFPQGPVTPGLFTGRGVQNVSNAQSSSWSAFGMVLGM
SNGGLDTIHSLGFQGTLRPPLNPTVGMGLPRQRCRDFEERGFCLRGDMCPMEHGVNRIVV
EDVQSLSQFNLPVSLPNAHMLGPATAQGSLPVIGPYGSLVSGKALHNKSTKPPVIDDGLG
LTDAFVDGSMAGGADFYDPDQPLWSNDRSETSAVLQDLNPSKIDDTGPLLDADSSDHDQV
GQCDAFELEHPLKGATAASGSQSVWERIRRSKNKSNVKEITDFTGDASSYDETGKDLELS
CSNQGNSHPGKQKMTESSFKPQSSSGHNMRKPSQKALRTLFVRGIPQKDNKPDALLSHFQ
KFGEVIDIHIPQSGERAFIQFSKREEAEAALRAPDAVMGNRFIKLFWANRDRIMDHGLNG
GINLPLTPRGVTSSVVQPHLSVPYKGKDNIQSLASKAAEQVPAVLLPSSGLPKPVAHNVP
KAAPVVQKKVESLELLKEELRKKQELLDQKRNEFRRQLVKLEKQAVGVKAEAVSDQDLKK
QEGEPVSYSAKVESSSSAELNNDVSSTQADAISDCSRSTENAERSCSISSSTVATQEPSS
LKQSIRPLAPHGAPFVFNRYKIDNRPTAFKVLPPLPCGLANVAVLKEHFSAFGDVTSVEL
EDLEPQDSSNGSETLSISARICFPTRRSAERAFLNGKIWQGQALQFMWLQSSNSTKDSGV
RNDAAPALKQPSDASAQPISKDSTGSEEGNTAGTDAPEKGYMEREKQPADANVQPIPEDP
LTGLQEGNAAGIDEPEKGYIEHVTVNEVPNSSSASTSVDRS

Transcript Sequence

Gene sequence data has not been registered.